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pccB protein (Acidaminococcus intestini) - STRING interaction network
"pccB" - Carboxyl transferase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pccBCarboxyl transferase; COG4799 (508 aa)    
Predicted Functional Partners:
mmdC
Glutaconyl-CoA decarboxylase subunit gamma; COG0511 (145 aa)
 
  0.958
fabD
Malonyl CoA-acyl carrier protein transacylase; COG0331 (315 aa)
 
 
  0.929
Acin_0296
annotation not available (108 aa)
              0.685
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor (331 aa)
 
     
  0.678
oadB
Glutaconyl-CoA decarboxylase subunit beta; COG1883 (376 aa)
         
  0.482
Acin_0721
3-hydroxybutyryl-CoA dehydrogenase; COG1250 (285 aa)
   
        0.473
rpsA
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; COG0761 (635 aa)
              0.473
hmgL
annotation not available (315 aa)
 
  0.442
Acin_0489
Butyryl-CoA dehydrogenase; COG2025 (591 aa)
   
   
  0.412
Acin_2030
annotation not available (422 aa)
     
        0.400
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95
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