STRINGSTRING
gctB protein (Acidaminococcus intestini) - STRING interaction network
"gctB" - Glutaconate CoA transferase subunit B in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gctBGlutaconate CoA transferase subunit B (267 aa)    
Predicted Functional Partners:
gctA
Glutaconate CoA transferase subunit A (315 aa)
 
  0.999
Acin_0320
2-hydroxyglutaryl-CoA dehydratase subunit D (477 aa)
 
   
    0.990
Acin_0318
glutaconyl-CoA decarboxylase subunit alpha (586 aa)
 
   
  0.963
Acin_0321
Benzoyl-CoA reductase (379 aa)
 
          0.904
Acin_0319
Hypothetical protein (260 aa)
 
          0.832
Acin_0489
butyryl-CoA dehydrogenase (591 aa)
 
   
  0.556
Acin_0604
FeS cluster-binding protein (271 aa)
   
          0.525
Acin_2258
Pyridine nucleotide-disulfide oxidoreductase (652 aa)
   
      0.502
pgk
Phosphoglycerate kinase (641 aa)
     
 
  0.465
Acin_0315
Hypothetical protein (42 aa)
              0.461
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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