STRINGSTRING
citC protein (Acidaminococcus intestini) - STRING interaction network
"citC" - Ligase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citCLigase; Acetylation of prosthetic group (2-(5’’-phosphoribosyl)- 3’-dephosphocoenzyme-A) of the gamma subunit of citrate lyase (350 aa)    
Predicted Functional Partners:
citG
Holo-acyl-carrier-protein synthase (451 aa)
 
  0.968
citE
Citrate lyase beta subunit (302 aa)
 
   
  0.891
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase (99 aa)
 
   
  0.878
citF
Citrate lyase alpha subunit (521 aa)
 
   
  0.872
Acin_0342
Hypothetical protein (368 aa)
              0.845
Acin_1093
Citrate carrier protein (445 aa)
 
     
  0.636
Acin_2182
Citrate carrier protein (435 aa)
 
     
  0.627
Acin_0341
Hypothetical protein (270 aa)
              0.557
rlmH
Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA (160 aa)
              0.540
Acin_0339
Peptidase S1/S6 (380 aa)
              0.540
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (3%) [HD]