STRINGSTRING
rny protein (Acidaminococcus intestini) - STRING interaction network
"rny" - HD-superfamily hydrolase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyHD-superfamily hydrolase; Endoribonuclease that initiates mRNA decay (445 aa)    
Predicted Functional Partners:
Acin_1032
Hypothetical protein (281 aa)
 
          0.741
cinA
Competence/damage-inducible protein cinA (413 aa)
         
  0.678
Acin_0365
Hypothetical protein (72 aa)
              0.664
Acin_0367
Hypothetical protein (40 aa)
              0.636
Acin_1586
Phosphoesterase (314 aa)
 
     
  0.601
rnc
Ribonuclease; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (238 aa)
           
  0.573
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (692 aa)
     
 
  0.567
lysS
lysyl-tRNA synthetase class II (657 aa)
 
     
  0.559
Acin_1139
Cell division protein ftsK/spoIIIE (801 aa)
 
          0.552
pfk
6-phosphofructokinase (366 aa)
     
 
  0.440
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (13%) [HD]