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rimM protein (Acidaminococcus intestini) - STRING interaction network
"rimM" - 16S rRNA processing protein rimM in Acidaminococcus intestini
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Predicted Interactions
gene neighborhood
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gene co-occurrence
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textmining
co-expression
protein homology
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rimM16S rRNA processing protein rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (167 aa)    
Predicted Functional Partners:
trmD
tRNA-(guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (246 aa)
 
   
  0.988
Acin_0399
16S rRNA processing protein rimM (135 aa)
            0.971
rpsP
30S ribosomal protein S16 (113 aa)
 
   
  0.921
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (93 aa)
     
 
  0.878
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (113 aa)
 
   
  0.872
Acin_0398
Hypothetical protein (40 aa)
              0.824
Acin_0404
Hypothetical protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (290 aa)
 
   
  0.753
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY (448 aa)
   
   
  0.740
lepB
Signal peptidase I (182 aa)
 
        0.718
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (220 aa)
     
   
  0.699
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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