STRINGSTRING
rnhB protein (Acidaminococcus intestini) - STRING interaction network
"rnhB" - Ribonuclease HII in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (270 aa)    
Predicted Functional Partners:
rnhC
Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (320 aa)
 
   
  0.981
Acin_0406
Endonuclease (117 aa)
 
      0.975
polA
DNA polymerase I (873 aa)
 
 
  0.893
pheT
phenylalanyl-tRNA synthetase subunit beta (811 aa)
 
   
  0.808
Acin_0407
Magnesiumchelatase (508 aa)
   
        0.770
dnaN
DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (372 aa)
     
 
  0.764
Acin_1848
Deoxyuridine 5’-triphosphate nucleotidohydrolase (208 aa)
   
        0.760
Acin_1126
Deoxyuridine 5`-triphosphate nucleotidohydrolase (155 aa)
   
        0.760
Acin_0064
Ribonucleotide reductase subunit alpha (757 aa)
 
   
  0.755
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (644 aa)
   
   
  0.750
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (9%) [HD]