STRINGSTRING
xthA protein (Acidaminococcus intestini) - STRING interaction network
"xthA" - Exodeoxyribonuclease III in Acidaminococcus intestini
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xthAExodeoxyribonuclease III (258 aa)    
Predicted Functional Partners:
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (210 aa)
 
 
  0.997
polA
DNA polymerase I (873 aa)
     
  0.985
mutY
A/G-specific adenine glycosylase (352 aa)
 
 
  0.980
dnaN
DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (372 aa)
     
  0.980
holB
DNA polymerase III delta’ subunit (326 aa)
     
  0.945
recO
DNA repair protein recO; Involved in DNA repair and RecF pathway recombination (247 aa)
     
 
  0.884
Acin_1428
Transcriptional regulator (483 aa)
   
  0.875
Acin_0517
Hypothetical protein (294 aa)
   
        0.868
alkA
Hypothetical protein (219 aa)
   
  0.866
Acin_0519
Exonuclease III (216 aa)
              0.859
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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