STRINGSTRING
potB protein (Acidaminococcus intestini) - STRING interaction network
"potB" - ABC spermidine/putrescine transporter in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potBABC spermidine/putrescine transporter (286 aa)    
Predicted Functional Partners:
potA
ABC spermidine/putrescine transporter (335 aa)
  0.999
potC
Binding-protein-dependent transport system inner membrane protein (265 aa)
 
0.998
potD
Hypothetical protein (353 aa)
 
 
  0.997
Acin_0237
ABC transporter-like protein (356 aa)
          0.688
Acin_0584
Hypothetical protein (46 aa)
              0.617
Acin_0585
Hydrolase (407 aa)
              0.533
Acin_0579
Hypothetical protein (80 aa)
              0.517
Acin_1476
UDP-N-acetylmuramate dehydrogenase; Cell wall formation (305 aa)
     
      0.442
Acin_1288
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation (311 aa)
     
      0.442
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (7%) [HD]