STRINGSTRING
Acin_0828 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_0828" - Polysaccharide deacetylase in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_0828Polysaccharide deacetylase (545 aa)    
Predicted Functional Partners:
Acin_0827
Glycosyl transferase family protein (341 aa)
 
          0.964
Acin_0826
Hypothetical protein (627 aa)
 
          0.951
Acin_0825
Glycosyl transferase family protein (574 aa)
 
          0.946
Acin_0824
Hypothetical protein (295 aa)
 
          0.892
wbpO
Nucleotide sugar dehydrogenase (443 aa)
 
          0.653
Acin_0609
Rubrerythrin (179 aa)
   
          0.519
Acin_0822
Hypothetical protein (120 aa)
              0.442
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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