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greA protein (Acidaminococcus intestini) - STRING interaction network
"greA" - GreA/GreB family elongation factor in Acidaminococcus intestini
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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greAGreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (173 aa)    
Predicted Functional Partners:
lysS
lysyl-tRNA synthetase class II (657 aa)
         
  0.915
rpoC
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1327 aa)
   
 
 
  0.868
rpoA
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (323 aa)
 
 
 
  0.824
rpoZ
DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (68 aa)
   
 
  0.696
Acin_1197
Hypothetical protein (78 aa)
 
          0.667
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1219 aa)
       
 
  0.644
polA
DNA polymerase I (873 aa)
   
   
  0.631
Acin_2416
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis (266 aa)
     
 
  0.623
Acin_0610
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis (274 aa)
     
 
  0.623
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination (359 aa)
 
 
 
  0.601
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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