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rfbB protein (Acidaminococcus intestini) - STRING interaction network
"rfbB" - dTDP-glucose 4,6-dehydratase in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbBdTDP-glucose 4,6-dehydratase (342 aa)    
Predicted Functional Partners:
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis (294 aa)
 
  0.998
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase (208 aa)
 
  0.984
rfbD
dTDP-4-dehydrorhamnose reductase (309 aa)
 
 
  0.966
Acin_1001
Glycosyl transferase family protein (309 aa)
   
   
  0.820
wbpP
UDP-N-acetylglucosamine 4-epimerase (233 aa)
   
   
 
0.808
Acin_0998
Hypothetical protein (359 aa)
 
   
0.769
Acin_1002
Hypothetical protein (466 aa)
              0.687
Acin_1000
Hypothetical protein (439 aa)
              0.687
Acin_0999
Hypothetical protein (190 aa)
              0.687
Acin_0996
Hypothetical protein (260 aa)
              0.670
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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