STRINGSTRING
ldcC protein (Acidaminococcus intestini) - STRING interaction network
"ldcC" - Orn/lys/arg decarboxylase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldcCOrn/lys/arg decarboxylase (486 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (205 aa)
              0.887
holB
DNA polymerase III delta’ subunit (326 aa)
   
        0.799
Acin_1033
Methyltransferase (242 aa)
              0.790
Acin_1032
Hypothetical protein (281 aa)
              0.790
Acin_1145
Aluminum resistance protein (411 aa)
 
          0.740
rsmI
uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (264 aa)
              0.721
Acin_0105
Radical SAM family protein (474 aa)
 
          0.613
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (644 aa)
              0.606
metY
O-acetylhomoserine (thiol)-lyase (431 aa)
       
      0.589
Acin_1036
Hydrolase (261 aa)
              0.587
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (3%) [HD]