STRINGSTRING
tauC protein (Acidaminococcus intestini) - STRING interaction network
"tauC" - Taurine transport system permease in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tauCTaurine transport system permease (251 aa)    
Predicted Functional Partners:
tauB
Nitrate transport ATP-binding protein (229 aa)
 
  0.995
tauA
Nitrogenase cofactor biosynthesis protein nifB (323 aa)
 
 
  0.990
Acin_1118
Hypothetical protein (86 aa)
              0.859
Acin_1119
Hypothetical protein (499 aa)
              0.565
Acin_1120
Hypothetical protein (152 aa)
              0.539
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (677 aa)
     
 
  0.517
Acin_1121
Tricarboxylate-binding protein (331 aa)
              0.499
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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