STRINGSTRING
Acin_1124 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_1124" - Pseudouridine synthase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_1124Pseudouridine synthase (296 aa)    
Predicted Functional Partners:
fbaA
Fructose-1,6-bisphosphate aldolase (301 aa)
              0.660
obg
Hypothetical protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control (426 aa)
 
 
  0.654
Acin_0853
Hypothetical protein (268 aa)
 
        0.640
Acin_1126
Deoxyuridine 5`-triphosphate nucleotidohydrolase (155 aa)
   
   
  0.639
rnc
Ribonuclease; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (238 aa)
 
 
  0.638
Acin_1127
Hypothetical protein (142 aa)
              0.614
Acin_1125
Hypothetical protein (185 aa)
              0.614
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (288 aa)
 
   
  0.607
Acin_0834
RNA methyltransferase (263 aa)
 
 
  0.588
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (209 aa)
 
   
  0.542
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (17%) [HD]