STRINGSTRING
rnj protein (Acidaminococcus intestini) - STRING interaction network
"rnj" - Beta-lactamase in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjBeta-lactamase (558 aa)    
Predicted Functional Partners:
Acin_1139
Cell division protein ftsK/spoIIIE (801 aa)
 
          0.852
Acin_1140
Hypothetical protein (398 aa)
              0.824
rimO
Hypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (442 aa)
   
        0.807
cinA
Competence/damage-inducible protein cinA (413 aa)
              0.806
Acin_1145
Aluminum resistance protein (411 aa)
 
          0.765
deaD
DEAD/DEAH helicase (537 aa)
   
   
  0.705
hflX
Small GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis (605 aa)
   
        0.680
Acin_1607
Zinc-dependent metalloprotease rasP (338 aa)
 
        0.621
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (287 aa)
   
        0.602
Acin_1173
Pseudouridine synthase (183 aa)
   
        0.540
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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