STRINGSTRING
icd protein (Acidaminococcus intestini) - STRING interaction network
"icd" - Isocitrate dehydrogenase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icdIsocitrate dehydrogenase (392 aa)    
Predicted Functional Partners:
Acin_1091
3-isopropylmalate dehydratase large subunit (598 aa)
 
 
  0.999
Acin_1201
Aconitate hydratase domain protein (766 aa)
 
  0.991
Acin_0596
Aconitate hydratase (649 aa)
 
  0.984
Acin_2405
3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate (418 aa)
 
 
  0.976
Acin_0171
Hypothetical protein (757 aa)
 
  0.970
Acin_1090
3-isopropylmalate dehydratase large subunit (369 aa)
 
 
  0.957
Acin_2087
Isocitrate dehydrogenase (459 aa)
   
  0.953
leuD
Homoaconitase (163 aa)
 
 
  0.918
Acin_1567
2-oxoglutarate ferredoxin oxidoreductase subunit beta (271 aa)
     
  0.915
Acin_0622
Ketoisovalerate oxidoreductase subunit vorA (246 aa)
     
  0.915
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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