STRINGSTRING
Acin_1207 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_1207" - Hypothetical protein in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_1207Hypothetical protein (126 aa)    
Predicted Functional Partners:
Acin_2290
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1167 aa)
         
  0.766
Acin_2032
Pyruvate-ferredoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1178 aa)
         
  0.766
Acin_1089
Hypothetical protein; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1168 aa)
         
  0.766
Acin_0057
Pyruvate ferredoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1134 aa)
         
  0.766
Acin_0752
Hypothetical protein (180 aa)
 
     
  0.558
Acin_0098
Rubredoxin (52 aa)
         
  0.547
Acin_1211
Carboxylesterase (245 aa)
              0.543
Acin_1210
Thioesterase (135 aa)
              0.543
rnr
Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (769 aa)
              0.543
smpB
Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (155 aa)
              0.543
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (5%) [HD]