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rnr protein (Acidaminococcus intestini) - STRING interaction network
"rnr" - Ribonuclease R in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
rnrRibonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (769 aa)    
Predicted Functional Partners:
smpB
Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (155 aa)
       
  0.988
Acin_1112
NUDIX hydrolase (181 aa)
   
  0.952
Acin_0908
Hypothetical protein (136 aa)
   
  0.952
Acin_0522
Hypothetical protein (165 aa)
   
  0.952
Acin_0273
Hypothetical protein (195 aa)
   
  0.952
Acin_0086
NUDIX hydrolase (210 aa)
   
  0.952
Acin_1211
Carboxylesterase (245 aa)
              0.887
Acin_1210
Thioesterase (135 aa)
              0.887
Acin_1991
Hypothetical protein (457 aa)
     
 
    0.803
Acin_1933
SNF2-related protein (366 aa)
     
 
    0.803
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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