STRINGSTRING
rtcB protein (Acidaminococcus intestini) - STRING interaction network
"rtcB" - Hypothetical protein in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBHypothetical protein (404 aa)    
Predicted Functional Partners:
Acin_1303
Hypothetical protein (310 aa)
              0.771
Acin_1305
Hypothetical protein (405 aa)
              0.655
Acin_1302
Hypothetical protein (259 aa)
              0.542
Acin_1301
Hypothetical protein (395 aa)
              0.542
deaD
DEAD/DEAH helicase (537 aa)
     
    0.528
Acin_0417
DEAD-box ATP-dependent RNA helicase ydbR (414 aa)
     
    0.528
prfB
Peptide chain release factor; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (366 aa)
   
   
  0.433
mtaP
Purine nucleoside phosphorylase (268 aa)
         
  0.416
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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