STRINGSTRING
mmuM protein (Acidaminococcus intestini) - STRING interaction network
"mmuM" - Homocysteine methyltransferase in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmuMHomocysteine methyltransferase (320 aa)    
Predicted Functional Partners:
metB
Cystathionine gamma-lyase (378 aa)
 
 
  0.921
Acin_1544
Hypothetical protein (392 aa)
   
   
    0.911
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (392 aa)
       
  0.909
metY
O-acetylhomoserine (thiol)-lyase (431 aa)
       
  0.905
luxS
Quorum-sensing autoinducer; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD) (158 aa)
         
  0.900
Acin_2049
Aminotransferase (391 aa)
         
    0.900
Acin_0412
Aminotransferase (416 aa)
         
    0.900
Acin_1416
Amino acid carrier protein (476 aa)
 
          0.878
metH
5-methyltetrahydrofolate--homocysteine methyltransferase (803 aa)
   
   
0.857
Acin_1162
Homoserine dehydrogenase (433 aa)
   
 
  0.823
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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