STRINGSTRING
gspF protein (Acidaminococcus intestini) - STRING interaction network
"gspF" - Hypothetical protein in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspFHypothetical protein (395 aa)    
Predicted Functional Partners:
gspE
General secretory pathway protein E (436 aa)
 
 
  0.930
Acin_0088
Type II and III secretion system protein (424 aa)
 
   
  0.895
Acin_1517
Hypothetical protein (132 aa)
 
          0.724
Acin_1516
Hypothetical protein (139 aa)
              0.613
Acin_1515
Hypothetical protein (167 aa)
              0.613
Acin_1514
Hypothetical protein (110 aa)
              0.613
cinA
Competence/damage-inducible protein cinA (413 aa)
         
  0.551
Acin_1513
Hypothetical protein (270 aa)
              0.520
Acin_1512
Hypothetical protein (283 aa)
              0.499
Acin_0455
Transposase (411 aa)
              0.452
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
Server load: low (11%) [HD]