STRINGSTRING
garD protein (Acidaminococcus intestini) - STRING interaction network
"garD" - Galactarate dehydratase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garDGalactarate dehydratase (522 aa)    
Predicted Functional Partners:
gudD
Glucarate dehydratase (442 aa)
 
 
  0.987
Acin_1538
Hypothetical protein (108 aa)
              0.859
Acin_0617
Transcriptional regulator (263 aa)
 
   
  0.700
Acin_0244
Transcriptional regulator (261 aa)
 
   
  0.593
Acin_2273
Putative C4-dicarboxylate TRAP-T family tripartite ATP-independent periplasmic transporter binding protein (320 aa)
 
     
  0.455
Acin_2272
Putative C4-dicarboxylater TRAP-T family tripartite ATP-independent periplasmic transporter membrane protein, small subunit (163 aa)
 
          0.451
Acin_0506
Fumarylacetoacetate hydrolase (289 aa)
 
          0.447
Acin_0537
Transcriptional regulator (230 aa)
 
        0.443
Acin_2118
Hypothetical protein (444 aa)
 
          0.438
Acin_1087
Transcriptional regulator (343 aa)
   
          0.434
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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