STRINGSTRING
gudD protein (Acidaminococcus intestini) - STRING interaction network
"gudD" - Glucarate dehydratase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gudDGlucarate dehydratase (442 aa)    
Predicted Functional Partners:
garD
Galactarate dehydratase (522 aa)
 
 
  0.987
Acin_2364
Aldehyde dehydrogenase (454 aa)
   
 
  0.908
Acin_1571
Gluconate transporter (477 aa)
              0.617
Acin_2112
Hypothetical protein (358 aa)
 
          0.609
Acin_1565
Dihydroxy-acid dehydratase (564 aa)
   
   
  0.501
Acin_1570
D-isomer specific 2-hydroxyacid dehydrogenase (318 aa)
   
        0.499
Acin_2286
Dihydrodipicolinate synthetase (323 aa)
   
   
  0.497
Acin_1131
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (297 aa)
   
   
  0.497
Acin_1573
DNA-binding transcriptional regulator cynR (319 aa)
              0.430
Acin_0441
Hypothetical protein (442 aa)
   
   
  0.416
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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