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pcaC protein (Acidaminococcus intestini) - STRING interaction network
"pcaC" - 4-carboxymuconolactone decarboxylase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaC4-carboxymuconolactone decarboxylase (276 aa)    
Predicted Functional Partners:
Acin_1752
Carboxymuconolactone decarboxylase (168 aa)
          0.965
purB
Adenylosuccinate lyase (430 aa)
   
 
  0.941
Acin_2428
Hypothetical protein (256 aa)
          0.924
Acin_1753
NADPH-dependent FMN reductase (215 aa)
   
        0.818
Acin_1755
Transcriptional regulator (150 aa)
 
          0.812
Acin_1744
Hypothetical protein (387 aa)
 
          0.618
Acin_1440
Hypothetical protein (332 aa)
 
        0.546
Acin_1447
Hypothetical protein (440 aa)
 
        0.529
Acin_1201
Aconitate hydratase domain protein (766 aa)
     
      0.474
Acin_0596
Aconitate hydratase (649 aa)
     
      0.474
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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