STRINGSTRING
tolC protein (Acidaminococcus intestini) - STRING interaction network
"tolC" - Outer membrane efflux protein in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolCOuter membrane efflux protein (439 aa)    
Predicted Functional Partners:
Acin_2225
Acriflavin resistance protein (386 aa)
 
 
  0.995
Acin_1777
Hypothetical protein (431 aa)
 
        0.910
Acin_2224
Hypothetical protein (1045 aa)
 
  0.909
Acin_1775
Hypothetical protein (1439 aa)
 
          0.896
Acin_2398
Multidrug RND transporter (370 aa)
 
 
  0.863
Acin_1779
Membrane protein (260 aa)
 
     
  0.854
Acin_0262
Hypothetical protein (382 aa)
 
 
  0.844
Acin_1774
Surface antigen (699 aa)
 
 
  0.822
Acin_1780
Hypothetical protein (564 aa)
 
          0.790
Acin_2399
Acriflavin resistance protein (1018 aa)
 
  0.776
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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