STRINGSTRING
Acin_2006 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_2006" - Hypothetical protein in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_2006Hypothetical protein (610 aa)    
Predicted Functional Partners:
Acin_1369
Hypothetical protein (326 aa)
 
          0.854
Acin_2021
Sugar isomerase (314 aa)
   
          0.698
Acin_0980
Hypothetical protein (75 aa)
   
          0.644
cas9
Crispr-associated protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The t [...] (1358 aa)
   
          0.632
Acin_1936
Hypothetical protein (762 aa)
   
          0.589
Acin_1357
Prophage protein (735 aa)
   
          0.579
Acin_1993
Prophage protein (747 aa)
   
          0.574
Acin_0979
Crispr-associated protein (273 aa)
   
          0.515
Acin_1943
Hypothetical protein (51 aa)
 
          0.485
Acin_2100
Hypothetical protein (576 aa)
   
          0.449
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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