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Acin_2028 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_2028" - TPR-repeat protein in Acidaminococcus intestini
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_2028TPR-repeat protein (323 aa)    
Predicted Functional Partners:
Acin_2027
TPR-repeat protein (314 aa)
          0.990
Acin_2026
Hypothetical protein (199 aa)
          0.987
Acin_1846
Putative DEAH-family helicase (454 aa)
   
    0.953
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination (185 aa)
   
    0.950
rpoA
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (323 aa)
     
    0.948
rpoC
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1327 aa)
     
  0.946
Acin_1396
DNA or RNA helicases of superfamily II (535 aa)
     
    0.943
Acin_0339
Peptidase S1/S6 (380 aa)
   
  0.942
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1219 aa)
     
  0.941
rpoZ
DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (68 aa)
     
 
    0.936
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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