STRINGSTRING
Acin_2088 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_2088" - Lytic transglycosylase in Acidaminococcus intestini
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_2088Lytic transglycosylase (198 aa)    
Predicted Functional Partners:
polA
DNA polymerase I (873 aa)
     
 
  0.726
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (288 aa)
     
      0.682
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A (205 aa)
              0.650
Acin_1036
Hydrolase (261 aa)
   
      0.444
murC
UDP-N-acetylmuramate-alanine ligase; Cell wall formation (463 aa)
 
 
 
  0.436
Acin_2440
Stage 0 sporulation protein J (320 aa)
   
   
  0.416
Acin_0310
Rod shape-determining protein RodA (370 aa)
 
 
 
  0.409
Acin_1984
Methylase (407 aa)
   
   
  0.402
Acin_1927
DNA methylase N-4/N-6 domain-containing protein (418 aa)
   
   
  0.402
Acin_1352
Methylase (416 aa)
   
   
  0.402
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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