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Acin_2219 protein (Acidaminococcus intestini) - STRING interaction network
"Acin_2219" - RNA polymerase in Acidaminococcus intestini
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acin_2219RNA polymerase (232 aa)    
Predicted Functional Partners:
Acin_2220
RNA methyltransferase (249 aa)
              0.869
Acin_0783
Polysaccharide biosynthesis protein (517 aa)
   
          0.666
recO
DNA repair protein recO; Involved in DNA repair and RecF pathway recombination (247 aa)
 
          0.656
rpoC
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1327 aa)
 
 
 
  0.656
Acin_2380
Polysaccharide biosynthesis protein (552 aa)
   
          0.620
mrnC
Ribonuclease III; Involved in correct processing of both the 5’ and 3’ ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors (154 aa)
 
          0.593
Acin_2221
Beta-lactamase (394 aa)
              0.590
Acin_2218
Hypothetical protein (153 aa)
              0.520
Acin_1197
Hypothetical protein (78 aa)
   
          0.512
pfk
6-phosphofructokinase (366 aa)
         
  0.503
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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