STRINGSTRING
manB protein (Acidaminococcus intestini) - STRING interaction network
"manB" - Phosphomannomutase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
manBPhosphomannomutase (454 aa)    
Predicted Functional Partners:
Acin_1096
Mannose-1-phosphate guanylyl transferase (295 aa)
   
  0.965
pgk
Phosphoglycerate kinase (641 aa)
   
 
  0.857
Acin_2351
UDP-glucose 4-epimerase (328 aa)
         
  0.854
Acin_2350
Hypothetical protein (644 aa)
   
        0.832
Acin_2349
Hypothetical protein (233 aa)
              0.829
Acin_2353
Hypothetical protein (332 aa)
              0.815
Acin_0485
UTP-glucose-1-phosphate uridylyltransferase (292 aa)
 
 
  0.799
Acin_2346
Hypothetical protein (114 aa)
   
 
  0.798
Acin_2348
Hypothetical protein (254 aa)
              0.778
dnaN
DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (372 aa)
   
 
  0.766
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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