STRINGSTRING
metY protein (Acidaminococcus intestini) - STRING interaction network
"metY" - O-acetylhomoserine in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metYO-acetylhomoserine (thiol)-lyase (431 aa)    
Predicted Functional Partners:
metH
5-methyltetrahydrofolate--homocysteine methyltransferase (803 aa)
       
  0.971
metA
Homoserine O-succinyltransferase (307 aa)
 
 
  0.952
metB
Cystathionine gamma-lyase (378 aa)
 
 
0.926
Acin_2442
Hypothetical protein (372 aa)
   
 
  0.922
mmuM
Homocysteine methyltransferase (320 aa)
       
  0.905
Acin_2049
Aminotransferase (391 aa)
       
  0.903
Acin_1544
Hypothetical protein (392 aa)
       
  0.903
luxS
Quorum-sensing autoinducer; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD) (158 aa)
       
    0.900
Acin_1162
Homoserine dehydrogenase (433 aa)
   
 
  0.883
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate (314 aa)
   
 
  0.809
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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