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fumC protein (Acidaminococcus intestini) - STRING interaction network
"fumC" - Fumarate hydratase in Acidaminococcus intestini
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumCFumarate hydratase (464 aa)    
Predicted Functional Partners:
Acin_1469
Malolactic enzyme (542 aa)
 
  0.961
Acin_1699
Malate dehydrogenase (423 aa)
   
  0.946
ttdB
L(+)-tartrate dehydratase beta subunit (205 aa)
   
 
  0.898
ttdA
L(+)-tartrate dehydratase alpha subunit (290 aa)
   
 
  0.889
Acin_2403
Hypothetical protein (94 aa)
              0.859
argH
Argininosuccinate lyase (470 aa)
     
 
0.812
yhdR
Aspartate aminotransferase (400 aa)
     
 
  0.812
Acin_0414
Aspartate aminotransferase (398 aa)
     
 
  0.812
Acin_2417
L-lactate dehydrogenase (317 aa)
   
 
  0.790
Acin_0505
L-lactate dehydrogenase (319 aa)
   
 
  0.790
Your Current Organism:
Acidaminococcus intestini
NCBI taxonomy Id: 568816
Other names: A. intestini, A. intestini RyC-MR95, Acidaminococcus intestini, Acidaminococcus intestini Jumas-Bilak et al. 2007, Acidaminococcus intestini RyC-MR95, Acidaminococcus intestini strain RyC-MR95, Acidaminococcus sp. ADV 255.99
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