Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| JBP2 | Q4CSB5_TRYCC | Q4DCH3 | Q4CSB5 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | 3'-5' exonuclease domain-containing protein. | 0.772 |
| JBP2 | Q4CVE3_TRYCC | Q4DCH3 | Q4CVE3 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | Histone H3 variant, putative. | 0.771 |
| JBP2 | Q4CYE3_TRYCC | Q4DCH3 | Q4CYE3 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. | 0.751 |
| JBP2 | Q4CYK4_TRYCC | Q4DCH3 | Q4CYK4 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | DNA repair protein, putative. | 0.751 |
| JBP2 | Q4D1I2_TRYCC | Q4DCH3 | Q4D1I2 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | Poly [ADP-ribose] polymerase. | 0.719 |
| JBP2 | Q4D5E1_TRYCC | Q4DCH3 | Q4D5E1 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | DNA repair protein, putative. | 0.751 |
| JBP2 | Q4DB33_TRYCC | Q4DCH3 | Q4DB33 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | Poly [ADP-ribose] polymerase. | 0.719 |
| JBP2 | Q4DNU5_TRYCC | Q4DCH3 | Q4DNU5 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | Lactamase_B domain-containing protein. | 0.727 |
| JBP2 | Q4DRD1_TRYCC | Q4DCH3 | Q4DRD1 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | Histone H3 variant, putative. | 0.771 |
| JBP2 | Q4DVR0_TRYCC | Q4DCH3 | Q4DVR0 | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | Uncharacterized protein. | 0.704 |
| Q4CSB5_TRYCC | JBP2 | Q4CSB5 | Q4DCH3 | 3'-5' exonuclease domain-containing protein. | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | 0.772 |
| Q4CSB5_TRYCC | Q4CVE3_TRYCC | Q4CSB5 | Q4CVE3 | 3'-5' exonuclease domain-containing protein. | Histone H3 variant, putative. | 0.489 |
| Q4CSB5_TRYCC | Q4CYE3_TRYCC | Q4CSB5 | Q4CYE3 | 3'-5' exonuclease domain-containing protein. | DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. | 0.999 |
| Q4CSB5_TRYCC | Q4CYK4_TRYCC | Q4CSB5 | Q4CYK4 | 3'-5' exonuclease domain-containing protein. | DNA repair protein, putative. | 0.999 |
| Q4CSB5_TRYCC | Q4D1I2_TRYCC | Q4CSB5 | Q4D1I2 | 3'-5' exonuclease domain-containing protein. | Poly [ADP-ribose] polymerase. | 0.443 |
| Q4CSB5_TRYCC | Q4D5E1_TRYCC | Q4CSB5 | Q4D5E1 | 3'-5' exonuclease domain-containing protein. | DNA repair protein, putative. | 0.999 |
| Q4CSB5_TRYCC | Q4DB33_TRYCC | Q4CSB5 | Q4DB33 | 3'-5' exonuclease domain-containing protein. | Poly [ADP-ribose] polymerase. | 0.443 |
| Q4CSB5_TRYCC | Q4DNU5_TRYCC | Q4CSB5 | Q4DNU5 | 3'-5' exonuclease domain-containing protein. | Lactamase_B domain-containing protein. | 0.751 |
| Q4CSB5_TRYCC | Q4DRD1_TRYCC | Q4CSB5 | Q4DRD1 | 3'-5' exonuclease domain-containing protein. | Histone H3 variant, putative. | 0.489 |
| Q4CVE3_TRYCC | JBP2 | Q4CVE3 | Q4DCH3 | Histone H3 variant, putative. | Bifunctional helicase and thymine dioxygenase JBP2; Dioxygenase that catalyzes the first step of DNA base J (beta-d-glucosyl-HOMedU) biosynthesis by converting thymine to 5- hydroxymethyluracil (HOMedU). DNA base J is a hypermodified thymidine residue found in the genome of kinetoplastid parasites, which is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. Probably also acts as a DNA helicase. Recognizes and binds specific regions of the genome, hydrolyzes ATP and allows the DNA base J de novo synthesis. Involved in [...] | 0.771 |
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