STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APD09841.1methylmalonyl-CoA mutase. (514 aa)    
Predicted Functional Partners:
APD08470.1
methylmalonyl-CoA mutase subunit alpha, chain B.
 0.999
APD08776.1
LAO/AO transport system kinase.
  
 0.984
APD09528.1
methylmalonyl-CoA epimerase.
 
  
 0.973
APD10046.1
succinyl-CoA synthetase subunit alpha.
    
 0.912
sucC
succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
  
 
 0.911
APD08469.1
methylmalonyl-CoA mutase subunit alpha.
  
  
 
0.902
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.874
APD09160.1
2-oxoacid--ferredoxin oxidoreductase subunit alpha.
    
 0.865
APD08793.1
Citrate synthase; Belongs to the citrate synthase family.
     
 0.816
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
 0.816
Your Current Organism:
Thermus brockianus
NCBI taxonomy Id: 56956
Other names: JCM 11602, NCIB 12676, NCIB:12676, NCIMB 12676, T. brockianus, strain YS38
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