STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO93703.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
SEO93675.1
L,D-transpeptidase catalytic domain.
       0.773
SEO06322.1
Invasion protein IalB, involved in pathogenesis.
  
     0.642
SEP13861.1
Hypothetical protein.
  
     0.581
SEP10274.1
DNA-binding transcriptional regulator, MarR family.
  
     0.575
SEP01271.1
DnaJ like chaperone protein.
  
     0.571
SEO78297.1
Hypothetical protein.
  
     0.557
SEO03365.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.534
SEO29474.1
Penicillin amidase.
  
     0.531
SEO52000.1
Membrane protein required for colicin V production.
  
     0.508
SEO28655.1
Hypothetical protein.
  
     0.506
Your Current Organism:
Salinihabitans flavidus
NCBI taxonomy Id: 569882
Other names: CCUG 56758, DSM 27842, KCTC 22485, Rhodobacteraceae bacterium ISL-46, S. flavidus, Salinihabitans flavidus Yoon et al. 2009, strain ISL-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.