STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVAG_129060Alpha amylase, catalytic domain containing protein. (486 aa)    
Predicted Functional Partners:
TVAG_276310
1,4-alpha-glucan branching enzyme IIB, chloroplast, putative.
  
 
 0.816
TVAG_453180
Starch branching enzyme, putative.
  
 
 0.816
TVAG_021750
Amino acid permease family protein.
  
 0.813
TVAG_056200
Amino acid permease family protein.
  
 0.813
TVAG_415450
Uncharacterized BCR, YhhW family COG1741 containing protein; Belongs to the pirin family.
  
 0.813
TVAG_169010
Uncharacterized BCR, YhhW family COG1741 containing protein; Belongs to the pirin family.
  
 0.813
TVAG_084860
Amino acid permease family protein.
  
 0.813
TVAG_480660
Amino acid permease family protein.
  
 0.813
TVAG_445130
Alanine dehydrogenase 2, putative.
  
 0.805
TVAG_235790
Alanine dehydrogenase, putative.
  
 0.805
Your Current Organism:
Trichomonas vaginalis
NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis
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