TVAG_156540 protein (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TVAG_156540

HTH_9 domain-containing protein. (508 aa)

Predicted Functional Partners:

TVAG_186530

0.540

TVAG_283180

0.540

TVAG_171980

0.540

TVAG_172240

0.540

TVAG_190340

0.540

TVAG_113600

0.540

TVAG_434510

0.540

TVAG_348020

0.540

TVAG_221960

0.540

TVAG_117450

0.540

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_113600	TVAG_117450	A2DNL3	A2E3T5	RNA polymerase Rpb5, N-terminal domain containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
TVAG_113600	TVAG_156540	A2DNL3	A2FRS6	RNA polymerase Rpb5, N-terminal domain containing protein.	HTH_9 domain-containing protein.	0.540
TVAG_113600	TVAG_171980	A2DNL3	A2DEU9	RNA polymerase Rpb5, N-terminal domain containing protein.	RNA polymerase Rpb5, C-terminal domain containing protein.	0.909
TVAG_113600	TVAG_172240	A2DNL3	A2DEX5	RNA polymerase Rpb5, N-terminal domain containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
TVAG_113600	TVAG_186530	A2DNL3	A2D8U6	RNA polymerase Rpb5, N-terminal domain containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
TVAG_113600	TVAG_190340	A2DNL3	A2DKG2	RNA polymerase Rpb5, N-terminal domain containing protein.	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	0.998
TVAG_113600	TVAG_221960	A2DNL3	A2E3F1	RNA polymerase Rpb5, N-terminal domain containing protein.	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative.	0.990
TVAG_113600	TVAG_283180	A2DNL3	A2DEM1	RNA polymerase Rpb5, N-terminal domain containing protein.	Uncharacterized protein.	0.540
TVAG_113600	TVAG_348020	A2DNL3	A2DSU3	RNA polymerase Rpb5, N-terminal domain containing protein.	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative.	0.990
TVAG_113600	TVAG_434510	A2DNL3	A2DSN4	RNA polymerase Rpb5, N-terminal domain containing protein.	Uncharacterized protein.	0.998
TVAG_117450	TVAG_113600	A2E3T5	A2DNL3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase Rpb5, N-terminal domain containing protein.	0.997
TVAG_117450	TVAG_156540	A2E3T5	A2FRS6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HTH_9 domain-containing protein.	0.540
TVAG_117450	TVAG_171980	A2E3T5	A2DEU9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase Rpb5, C-terminal domain containing protein.	0.997
TVAG_117450	TVAG_172240	A2E3T5	A2DEX5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TVAG_117450	TVAG_186530	A2E3T5	A2D8U6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
TVAG_117450	TVAG_190340	A2E3T5	A2DKG2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	0.999
TVAG_117450	TVAG_221960	A2E3T5	A2E3F1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative.	0.993
TVAG_117450	TVAG_283180	A2E3T5	A2DEM1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.540
TVAG_117450	TVAG_348020	A2E3T5	A2DSU3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative.	0.993
TVAG_117450	TVAG_434510	A2E3T5	A2DSN4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999