TVAG_092770 protein (Trichomonas vaginalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TVAG_092770

Uncharacterized protein. (237 aa)

Predicted Functional Partners:

TVAG_172240

0.876

TVAG_117450

0.853

TVAG_074910

0.801

TVAG_139840

0.784

TVAG_379530

0.739

TVAG_353520

0.739

TVAG_190340

0.738

TVAG_016650

0.733

TVAG_482170

0.721

TVAG_380300

0.716

Your Current Organism:

Trichomonas vaginalis

NCBI taxonomy Id: 5722
Other names: T. vaginalis, Tritrichomonas vaginalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVAG_016650	TVAG_074910	A2ER03	A2E408	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	RNA polymerase Rpc34 subunit family protein.	0.999
TVAG_016650	TVAG_092770	A2ER03	A2FTT4	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Uncharacterized protein.	0.733
TVAG_016650	TVAG_117450	A2ER03	A2E3T5	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TVAG_016650	TVAG_139840	A2ER03	A2EJ51	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	Transcription factor TFIIB repeat family protein.	0.997
TVAG_016650	TVAG_172240	A2ER03	A2DEX5	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TVAG_016650	TVAG_190340	A2ER03	A2DKG2	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	0.999
TVAG_016650	TVAG_353520	A2ER03	A2EN74	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TVAG_016650	TVAG_379530	A2ER03	A2E7H8	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
TVAG_016650	TVAG_380300	A2ER03	A2DXG8	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
TVAG_016650	TVAG_482170	A2ER03	A2EBM6	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
TVAG_074910	TVAG_016650	A2E408	A2ER03	RNA polymerase Rpc34 subunit family protein.	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	0.999
TVAG_074910	TVAG_092770	A2E408	A2FTT4	RNA polymerase Rpc34 subunit family protein.	Uncharacterized protein.	0.801
TVAG_074910	TVAG_117450	A2E408	A2E3T5	RNA polymerase Rpc34 subunit family protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TVAG_074910	TVAG_139840	A2E408	A2EJ51	RNA polymerase Rpc34 subunit family protein.	Transcription factor TFIIB repeat family protein.	0.999
TVAG_074910	TVAG_172240	A2E408	A2DEX5	RNA polymerase Rpc34 subunit family protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TVAG_074910	TVAG_190340	A2E408	A2DKG2	RNA polymerase Rpc34 subunit family protein.	RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein.	0.999
TVAG_074910	TVAG_353520	A2E408	A2EN74	RNA polymerase Rpc34 subunit family protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
TVAG_074910	TVAG_379530	A2E408	A2E7H8	RNA polymerase Rpc34 subunit family protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
TVAG_074910	TVAG_380300	A2E408	A2DXG8	RNA polymerase Rpc34 subunit family protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.966
TVAG_074910	TVAG_482170	A2E408	A2EBM6	RNA polymerase Rpc34 subunit family protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999