STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traUTraU conjugal transfer protein. (1018 aa)    
Predicted Functional Partners:
traM_1
TraM conjugal transfer protein.
 
     0.950
traN
TraN conjugal transfer protein.
 
     0.950
traO
TraO conjugal transfer protein.
  
  
 0.895
triG
TriG conjugal transfer protein.
  
 
 0.798
trbC_1
TrbC conjugative transfer protein; N terminal truncation.
 
  
 0.784
trbC_3
TrbC conjugal transfer protein; C terminus, interrupted by GII intron.
 
  
 0.784
trbC_2
TrbC conjugal transfer protein; C terminal truncation.
 
  
 0.782
traI_1
TraI conjugal transfer protein.
 
     0.774
traI_2
TraI conjugal transfer protein.
 
     0.774
HDEF_0969
Hypothetical protein.
       0.773
Your Current Organism:
Hamiltonella defensa
NCBI taxonomy Id: 572265
Other names: C. Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa str. 5AT (Acyrthosiphon pisum), Candidatus Hamiltonella defensa strain 5AT (Acyrthosiphon pisum)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.