node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rpsA | rpsB | HDEF_0696 | HDEF_1312 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 0.990 |
rpsA | rpsD | HDEF_0696 | HDEF_1842 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rpsA | rpsE | HDEF_0696 | HDEF_1849 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.994 |
rpsA | rpsG | HDEF_0696 | HDEF_0720 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.995 |
rpsA | rpsH | HDEF_0696 | HDEF_1852 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.996 |
rpsA | rpsK | HDEF_0696 | HDEF_1843 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rpsA | rpsL | HDEF_0696 | HDEF_0721 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.994 |
rpsA | rpsM | HDEF_0696 | HDEF_1844 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.970 |
rpsA | rpsN | HDEF_0696 | HDEF_1853 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.919 |
rpsA | rpsO | HDEF_0696 | HDEF_0328 | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.977 |
rpsB | rpsA | HDEF_1312 | HDEF_0696 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.990 |
rpsB | rpsD | HDEF_1312 | HDEF_1842 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rpsB | rpsE | HDEF_1312 | HDEF_1849 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpsB | rpsG | HDEF_1312 | HDEF_0720 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsH | HDEF_1312 | HDEF_1852 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rpsB | rpsK | HDEF_1312 | HDEF_1843 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rpsB | rpsL | HDEF_1312 | HDEF_0721 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
rpsB | rpsM | HDEF_1312 | HDEF_1844 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rpsB | rpsN | HDEF_1312 | HDEF_1853 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rpsB | rpsO | HDEF_1312 | HDEF_0328 | 30S ribosomal subunit protein S2; COG0052; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal subunit protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |