node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Vdis_1210 | rpl1 | Vdis_1210 | Vdis_0019 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.999 |
Vdis_1210 | rpl10 | Vdis_1210 | Vdis_0018 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
Vdis_1210 | rpl10e | Vdis_1210 | Vdis_0009 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR018255:IPR016180:IPR001197; KEGG: cma:Cmaq_0968 50S ribosomal protein L10e; PFAM: Ribosomal protein L10e/L16; SPTR: A8MDE4 50S ribosomal protein L10e; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
Vdis_1210 | rpl11 | Vdis_1210 | Vdis_0020 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.999 |
Vdis_1210 | rpl29 | Vdis_1210 | Vdis_0361 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Ribosomal protein L29; InterPro IPR001854:IPR018254; KEGG: pis:Pisl_1728 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: A1RV97 LSU ribosomal protein L29P; TIGRFAM: ribosomal protein L29; manually curated; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
Vdis_1210 | rpl5 | Vdis_1210 | Vdis_0284 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
Vdis_1210 | rpoD | Vdis_1210 | Vdis_0085 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase insert; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. | 0.999 |
Vdis_1210 | rpoN | Vdis_1210 | Vdis_0081 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase, N/8 Kd subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.999 |
Vdis_1210 | rps3 | Vdis_1210 | Vdis_0360 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. | 0.999 |
Vdis_1210 | rps9 | Vdis_1210 | Vdis_0082 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | COGs: COG0103 Ribosomal protein S9; InterProIPR020574:IPR020568:IPR019958:IPR014721:IPR 000754; KEGG: cma:Cmaq_1571 30S ribosomal protein S9P; PFAM: ribosomal protein S9; SPTR: A8M9S3 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rpl1 | Vdis_1210 | Vdis_0019 | Vdis_1210 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
rpl1 | rpl10 | Vdis_0019 | Vdis_0018 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rpl1 | rpl10e | Vdis_0019 | Vdis_0009 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR018255:IPR016180:IPR001197; KEGG: cma:Cmaq_0968 50S ribosomal protein L10e; PFAM: Ribosomal protein L10e/L16; SPTR: A8MDE4 50S ribosomal protein L10e; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rpl1 | rpl11 | Vdis_0019 | Vdis_0020 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. | 0.999 |
rpl1 | rpl29 | Vdis_0019 | Vdis_0361 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | Ribosomal protein L29; InterPro IPR001854:IPR018254; KEGG: pis:Pisl_1728 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: A1RV97 LSU ribosomal protein L29P; TIGRFAM: ribosomal protein L29; manually curated; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
rpl1 | rpl5 | Vdis_0019 | Vdis_0284 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
rpl1 | rpoD | Vdis_0019 | Vdis_0085 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | RNA polymerase insert; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. | 0.999 |
rpl1 | rpoN | Vdis_0019 | Vdis_0081 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | RNA polymerase, N/8 Kd subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.656 |
rpl1 | rps3 | Vdis_0019 | Vdis_0360 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rpl1 | rps9 | Vdis_0019 | Vdis_0082 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | COGs: COG0103 Ribosomal protein S9; InterProIPR020574:IPR020568:IPR019958:IPR014721:IPR 000754; KEGG: cma:Cmaq_1571 30S ribosomal protein S9P; PFAM: ribosomal protein S9; SPTR: A8M9S3 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. | 0.999 |