node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Vdis_1836 | Vdis_1949 | Vdis_1836 | Vdis_1949 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: cma:Cmaq_1739 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: A8MAI5 Exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | 0.647 |
Vdis_1836 | Vdis_2388 | Vdis_1836 | Vdis_2388 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR006142:IPR006141:IPR014021:IPR001650:IPR 014001:IPR003587:IPR003586:IPR006935; KEGG: cma:Cmaq_0822 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; Hedgehog/intein hint domain protein; DEAD-like helicase; SPTR: A8MD01 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region. | 0.428 |
Vdis_1836 | fen | Vdis_1836 | Vdis_0054 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.912 |
Vdis_1836 | lig | Vdis_1836 | Vdis_1519 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.791 |
Vdis_1836 | pcn | Vdis_1836 | Vdis_1828 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.923 |
Vdis_1836 | pcn-2 | Vdis_1836 | Vdis_2057 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.932 |
Vdis_1836 | priL | Vdis_1836 | Vdis_1294 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | DNA primase, large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. | 0.965 |
Vdis_1836 | priS | Vdis_1836 | Vdis_2058 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | DNA primase, small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...] | 0.944 |
Vdis_1836 | rfcL | Vdis_1836 | Vdis_2239 | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | AAA ATPase central domain protein; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.721 |
Vdis_1949 | Vdis_1836 | Vdis_1949 | Vdis_1836 | Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: cma:Cmaq_1739 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: A8MAI5 Exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | 0.647 |
Vdis_1949 | fen | Vdis_1949 | Vdis_0054 | Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: cma:Cmaq_1739 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: A8MAI5 Exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.999 |
Vdis_1949 | lig | Vdis_1949 | Vdis_1519 | Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: cma:Cmaq_1739 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: A8MAI5 Exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.986 |
Vdis_1949 | pcn | Vdis_1949 | Vdis_1828 | Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: cma:Cmaq_1739 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: A8MAI5 Exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.864 |
Vdis_1949 | pcn-2 | Vdis_1949 | Vdis_2057 | Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: cma:Cmaq_1739 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: A8MAI5 Exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.864 |
Vdis_1949 | rfcL | Vdis_1949 | Vdis_2239 | Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: cma:Cmaq_1739 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: A8MAI5 Exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). | AAA ATPase central domain protein; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily. | 0.595 |
Vdis_2388 | Vdis_1836 | Vdis_2388 | Vdis_1836 | Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR006142:IPR006141:IPR014021:IPR001650:IPR 014001:IPR003587:IPR003586:IPR006935; KEGG: cma:Cmaq_0822 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; Hedgehog/intein hint domain protein; DEAD-like helicase; SPTR: A8MD01 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region. | COGs: COG0417 DNA polymerase elongation subunit (family B); InterProIPR017966:IPR006133:IPR006134:IPR017964:IPR 006172:IPR012337; KEGG: cma:Cmaq_0144 DNA polymerase I; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase B; SPTR: A8MA62 DNA polymerase; PFAM: DNA polymerase family B; DNA polymerase family B, exonuclease domain. | 0.428 |
Vdis_2388 | fen | Vdis_2388 | Vdis_0054 | Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR006142:IPR006141:IPR014021:IPR001650:IPR 014001:IPR003587:IPR003586:IPR006935; KEGG: cma:Cmaq_0822 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; Hedgehog/intein hint domain protein; DEAD-like helicase; SPTR: A8MD01 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.970 |
Vdis_2388 | lig | Vdis_2388 | Vdis_1519 | Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR006142:IPR006141:IPR014021:IPR001650:IPR 014001:IPR003587:IPR003586:IPR006935; KEGG: cma:Cmaq_0822 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; Hedgehog/intein hint domain protein; DEAD-like helicase; SPTR: A8MD01 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region. | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.867 |
Vdis_2388 | pcn | Vdis_2388 | Vdis_1828 | Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR006142:IPR006141:IPR014021:IPR001650:IPR 014001:IPR003587:IPR003586:IPR006935; KEGG: cma:Cmaq_0822 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; Hedgehog/intein hint domain protein; DEAD-like helicase; SPTR: A8MD01 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region. | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.517 |
Vdis_2388 | pcn-2 | Vdis_2388 | Vdis_2057 | Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterProIPR006142:IPR006141:IPR014021:IPR001650:IPR 014001:IPR003587:IPR003586:IPR006935; KEGG: cma:Cmaq_0822 helicase domain-containing protein; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: helicase domain protein; Hedgehog/intein hint domain protein; DEAD-like helicase; SPTR: A8MD01 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region. | Proliferating cell nuclear antigen PcnA; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.517 |