STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eRibosomal protein L40e; InterPro IPR001876:IPR001975; KEGG: cma:Cmaq_1147 50S ribosomal protein L40e; PFAM: Ribosomal protein L40e; SPTR: A8MDW8 Zinc finger RanBP2-type; PFAM: Zn-finger in Ran binding protein and others; Belongs to the eukaryotic ribosomal protein eL40 family. (51 aa)    
Predicted Functional Partners:
rpl18a
COGs: COG2157 Ribosomal protein L20A (L18A); InterPro IPR002768; KEGG: pai:PAE3098 ribosomal protein LX; PFAM: Ribosomal LX protein; SPTR: Q8ZTU0 50S ribosomal protein LX; PFAM: Ribosomal L18ae/LX protein domain.
  
 0.999
rpl18e
COGs: COG1727 Ribosomal protein L18E; InterPro IPR001196; KEGG: pis:Pisl_0696 50S ribosomal protein L18e; PFAM: ribosomal protein L15; SPTR: A1RSE2 50S ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.999
rpl5
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
   
 0.999
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.999
rpl29
Ribosomal protein L29; InterPro IPR001854:IPR018254; KEGG: pis:Pisl_1728 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: A1RV97 LSU ribosomal protein L29P; TIGRFAM: ribosomal protein L29; manually curated; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 0.999
rps24e
COGs: COG2004 Ribosomal protein S24E; InterPro IPR018098:IPR001976:IPR012677; KEGG: cma:Cmaq_0004 ribosomal protein S24E-like protein; PFAM: Ribosomal protein S24e; SPTR: A8M9H7 Ribosomal protein S24E-like protein; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
 
 0.999
rpl21e
COGs: COG2139 Ribosomal protein L21E; InterPro IPR008991:IPR018259:IPR001147; KEGG: pas:Pars_1748 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; SPTR: A4WLN2 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 0.999
rpl34e
COGs: COG2174 Ribosomal protein L34E; InterPro IPR008195; KEGG: pcl:Pcal_1110 50S ribosomal protein L34E; PFAM: Ribosomal protein L34e; SPTR: A3MV68 50S ribosomal protein L34e; PFAM: Ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family.
   
 
 0.999
rpl13e
COGs: COG4352 Ribosomal protein L13E; KEGG: pcl:Pcal_0588 50S ribosomal protein L13E; SPTR: A3MTP8 60S ribosomal protein L13; PFAM: Ribosomal protein L13e; Belongs to the eukaryotic ribosomal protein eL13 family.
  
 0.999
rps17
Ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.999
Your Current Organism:
Vulcanisaeta distributa
NCBI taxonomy Id: 572478
Other names: V. distributa DSM 14429, Vulcanisaeta distributa DSM 14429, Vulcanisaeta distributa str. DSM 14429, Vulcanisaeta distributa strain DSM 14429
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.