STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADG93405.1Type VI secretion protein, VC_A0114 family; COGs: COG3522 conserved hypothetical protein; InterPro IPR010263; KEGG: vfm:VFMJ11_1077 type VI secretion protein, family; PFAM: protein of unknown function DUF876; SPTR: Q5E656 Putative uncharacterized protein; TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family. (443 aa)    
Predicted Functional Partners:
ADG93399.1
Type VI secretion protein, VC_A0110 family; COGs: COG3519 conserved hypothetical protein; InterPro IPR010272; KEGG: pen:PSEEN0526 hypothetical protein; PFAM: protein of unknown function DUF879; SPTR: Q1IFT0 Putative uncharacterized protein; TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family.
 
 
 0.988
ADG93396.1
Type VI secretion protein, VC_A0107 family; COGs: COG3516 conserved hypothetical protein; InterPro IPR008312; KEGG: vfm:VFMJ11_A0823 type VI secretion protein, family; PFAM: conserved hypothetical protein; SPTR: B5EUK4 Type VI secretion protein, family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family.
 
  
 0.980
ADG93404.1
Type VI secretion lipoprotein, VC_A0113 family; COGs: COG3521 conserved hypothetical protein; InterPro IPR017734; KEGG: vex:VEA_000013 type VI secretion lipoprotein/VasD; SPTR: Q1VBV4 Putative uncharacterized protein; TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; TIGRFAM: type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.976
ADG93406.1
Type IV / VI secretion system protein, DotU family; COGs: COG3455 conserved hypothetical protein; InterPro IPR017732; KEGG: vsa:VSAL_I1114 putative type VI secretion protein VasF; PFAM: Type IV / VI secretion system, DotU; SPTR: B6EJ68 Putative type VI secretion protein VasF; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family.
 
  
 0.973
ADG93403.1
COGs: COG3456 conserved hypothetical protein contains FHA domain; InterPro IPR017735:IPR000253:IPR008984; KEGG: vfi:VF_0997 phospho-specific protein-protein interaction motif-containing protein; PFAM: Forkhead-associated protein; SPTR: Q5E654 Phospho-specific protein-protein interaction motif FHA; TIGRFAM: type VI secretion system FHA domain protein; PFAM: FHA domain; TIGRFAM: type VI secretion system FHA domain protein.
 
  
 0.966
ADG93407.1
Type VI secretion protein IcmF; COGs: COG3523 conserved hypothetical protein; InterPro IPR017731:IPR016160:IPR009612:IPR010623; KEGG: vfi:VF_0993 secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; SPTR: Q5E658 Secretion protein IcmF; TIGRFAM: type VI secretion protein IcmF; PFAM: Protein of unknown function (DUF1215); Intracellular multiplication and human macrophage-killing; TIGRFAM: type VI secretion protein IcmF.
 
  
 0.962
ADG93397.1
Type VI secretion protein, EvpB/VC_A0108 family; COGs: COG3517 conserved hypothetical protein; InterPro IPR010269; KEGG: pst:PSPTO_5432 hypothetical protein; PFAM: protein of unknown function DUF877; SPTR: Q87U76 Putative uncharacterized protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.946
ADG93410.1
Type VI secretion system effector, Hcp1 family; COGs: COG3157 Hemolysin-coregulated protein (uncharacterized); InterPro IPR017728:IPR008514; KEGG: vfm:VFMJ11_A1070 hemolysin co-regulated protein; PFAM: protein of unknown function DUF796; SPTR: Q5DYX2 Hemolysin co-regulated protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: Protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family.
 
  
 0.937
ADG93400.1
Type VI secretion protein, VC_A0111 family; COGs: COG3520 conserved hypothetical protein; InterPro IPR010732; KEGG: tau:Tola_0198 type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; SPTR: C4L829 Type VI secretion protein, VC_A0111 family; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: Protein of unknown function (DUF1305); TIGRFAM: type VI secretion protein, VC_A0111 family.
 
  
 0.933
ADG93398.1
Type VI secretion system lysozyme-related protein; COGs: COG3518 conserved hypothetical protein; InterPro IPR017737:IPR007048; KEGG: pen:PSEEN0525 hypothetical protein; PFAM: GPW/gp25 family protein; SPTR: Q1IFT1 Putative uncharacterized protein; TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein.
 
  
 0.930
Your Current Organism:
Arcobacter nitrofigilis
NCBI taxonomy Id: 572480
Other names: A. nitrofigilis DSM 7299, Arcobacter nitrofigilis DSM 7299, Arcobacter nitrofigilis str. DSM 7299, Arcobacter nitrofigilis strain DSM 7299
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.