STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADG93414.1Rhs element Vgr protein; COGs: COG3501 conserved hypothetical protein; InterPro IPR017847:IPR006533; KEGG: vfi:VF_1229 VgrG protein; PFAM: Rhs element Vgr protein; SPTR: Q5E5H2 VgrG protein; TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein; PFAM: Phage-related baseplate assembly protein; TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein. (844 aa)    
Predicted Functional Partners:
ADG93411.1
Rhs element Vgr protein; COGs: COG3501 conserved hypothetical protein; InterPro IPR017847:IPR006533; KEGG: vfi:VF_1229 VgrG protein; PFAM: Rhs element Vgr protein; SPTR: Q5E5H2 VgrG protein; TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein; PFAM: Phage-related baseplate assembly protein; TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein.
 
  
 
0.963
ADG93396.1
Type VI secretion protein, VC_A0107 family; COGs: COG3516 conserved hypothetical protein; InterPro IPR008312; KEGG: vfm:VFMJ11_A0823 type VI secretion protein, family; PFAM: conserved hypothetical protein; SPTR: B5EUK4 Type VI secretion protein, family; TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family.
 
  
 0.936
ADG93400.1
Type VI secretion protein, VC_A0111 family; COGs: COG3520 conserved hypothetical protein; InterPro IPR010732; KEGG: tau:Tola_0198 type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; SPTR: C4L829 Type VI secretion protein, VC_A0111 family; TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: Protein of unknown function (DUF1305); TIGRFAM: type VI secretion protein, VC_A0111 family.
 
  
 0.933
ADG93413.1
Protein of unknown function DUF2235; InterPro IPR018712; KEGG: chu:CHU_0711 hypothetical protein; PFAM: Protein of unknown function DUF2235; SPTR: A3JFP8 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2235).
 
     0.924
ADG93406.1
Type IV / VI secretion system protein, DotU family; COGs: COG3455 conserved hypothetical protein; InterPro IPR017732; KEGG: vsa:VSAL_I1114 putative type VI secretion protein VasF; PFAM: Type IV / VI secretion system, DotU; SPTR: B6EJ68 Putative type VI secretion protein VasF; TIGRFAM: type IV / VI secretion system protein, DotU family; PFAM: Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family.
 
  
 0.918
ADG93410.1
Type VI secretion system effector, Hcp1 family; COGs: COG3157 Hemolysin-coregulated protein (uncharacterized); InterPro IPR017728:IPR008514; KEGG: vfm:VFMJ11_A1070 hemolysin co-regulated protein; PFAM: protein of unknown function DUF796; SPTR: Q5DYX2 Hemolysin co-regulated protein; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: Protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family.
 
  
 0.904
ADG93397.1
Type VI secretion protein, EvpB/VC_A0108 family; COGs: COG3517 conserved hypothetical protein; InterPro IPR010269; KEGG: pst:PSPTO_5432 hypothetical protein; PFAM: protein of unknown function DUF877; SPTR: Q87U76 Putative uncharacterized protein; TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.900
ADG93404.1
Type VI secretion lipoprotein, VC_A0113 family; COGs: COG3521 conserved hypothetical protein; InterPro IPR017734; KEGG: vex:VEA_000013 type VI secretion lipoprotein/VasD; SPTR: Q1VBV4 Putative uncharacterized protein; TIGRFAM: type VI secretion lipoprotein, VC_A0113 family; TIGRFAM: type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.896
ADG93395.1
ImpA domain protein; COGs: COG3515 conserved hypothetical protein; InterPro IPR010657; KEGG: vfm:VFMJ11_1088 type VI secretion-associated protein, family; PFAM: ImpA domain protein; SPTR: B5FD91 Type VI secretion-associated protein, family; PFAM: ImpA-related N-terminal; TIGRFAM: type VI secretion-associated protein, VC_A0119 family.
 
  
 0.890
ADG93398.1
Type VI secretion system lysozyme-related protein; COGs: COG3518 conserved hypothetical protein; InterPro IPR017737:IPR007048; KEGG: pen:PSEEN0525 hypothetical protein; PFAM: GPW/gp25 family protein; SPTR: Q1IFT1 Putative uncharacterized protein; TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein.
 
  
 0.890
Your Current Organism:
Arcobacter nitrofigilis
NCBI taxonomy Id: 572480
Other names: A. nitrofigilis DSM 7299, Arcobacter nitrofigilis DSM 7299, Arcobacter nitrofigilis str. DSM 7299, Arcobacter nitrofigilis strain DSM 7299
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