STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE56327.1PFAM: peptidase U34 dipeptidase; KEGG: dal:Dalk_1471 peptidase U34 dipeptidase. (538 aa)    
Predicted Functional Partners:
ADE56622.1
PFAM: B3/4 domain protein; KEGG: dvl:Dvul_1142 hypothetical protein.
 
     0.521
ADE56328.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: rpa:RPA1299 hypothetical protein.
       0.510
ADE56326.1
KEGG: mlo:mlr6093 hypothetical protein.
       0.487
ADE56324.1
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: aha:AHA_2628 arginine/ornithine antiporter.
       0.467
ADE56325.1
Hypothetical protein.
       0.467
ADE57307.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: similar to CG1236-PA.
   
    0.408
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.