node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADE56151.1 | ADE56824.1 | Amico_0002 | Amico_0689 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: DNA polymerase III delta. | 0.934 |
ADE56151.1 | ADE56865.1 | Amico_0002 | Amico_0732 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gur:Gura_2507 DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein. | 0.993 |
ADE56151.1 | ADE57176.1 | Amico_0002 | Amico_1052 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: pca:Pcar_1692 DNA polymerase III, gamma/tau subunits. | 0.999 |
ADE56151.1 | ADE57689.1 | Amico_0002 | Amico_1573 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: dma:DMR_30070 hypothetical protein. | 0.991 |
ADE56151.1 | dnaX | Amico_0002 | Amico_0731 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.993 |
ADE56151.1 | polA | Amico_0002 | Amico_1259 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.995 |
ADE56821.1 | ADE56822.1 | Amico_0686 | Amico_0687 | PFAM: protein of unknown function DUF107; KEGG: neu:NE2468 hypothetical protein. | Band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein; PFAM: band 7 protein; SMART: band 7 protein. | 0.966 |
ADE56821.1 | ADE56824.1 | Amico_0686 | Amico_0689 | PFAM: protein of unknown function DUF107; KEGG: neu:NE2468 hypothetical protein. | PFAM: DNA polymerase III delta. | 0.577 |
ADE56821.1 | leuS | Amico_0686 | Amico_0688 | PFAM: protein of unknown function DUF107; KEGG: neu:NE2468 hypothetical protein. | KEGG: dvl:Dvul_1861 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.578 |
ADE56821.1 | radA | Amico_0686 | Amico_0685 | PFAM: protein of unknown function DUF107; KEGG: neu:NE2468 hypothetical protein. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.795 |
ADE56822.1 | ADE56821.1 | Amico_0687 | Amico_0686 | Band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein; PFAM: band 7 protein; SMART: band 7 protein. | PFAM: protein of unknown function DUF107; KEGG: neu:NE2468 hypothetical protein. | 0.966 |
ADE56822.1 | ADE56824.1 | Amico_0687 | Amico_0689 | Band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein; PFAM: band 7 protein; SMART: band 7 protein. | PFAM: DNA polymerase III delta. | 0.578 |
ADE56822.1 | leuS | Amico_0687 | Amico_0688 | Band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein; PFAM: band 7 protein; SMART: band 7 protein. | KEGG: dvl:Dvul_1861 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.609 |
ADE56822.1 | polA | Amico_0687 | Amico_1259 | Band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein; PFAM: band 7 protein; SMART: band 7 protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.443 |
ADE56822.1 | radA | Amico_0687 | Amico_0685 | Band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein; PFAM: band 7 protein; SMART: band 7 protein. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.795 |
ADE56824.1 | ADE56151.1 | Amico_0689 | Amico_0002 | PFAM: DNA polymerase III delta. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.934 |
ADE56824.1 | ADE56821.1 | Amico_0689 | Amico_0686 | PFAM: DNA polymerase III delta. | PFAM: protein of unknown function DUF107; KEGG: neu:NE2468 hypothetical protein. | 0.577 |
ADE56824.1 | ADE56822.1 | Amico_0689 | Amico_0687 | PFAM: DNA polymerase III delta. | Band 7 protein; KEGG: sat:SYN_02180 membrane protease subunit, stomatin/prohibitin -like protein; PFAM: band 7 protein; SMART: band 7 protein. | 0.578 |
ADE56824.1 | ADE56865.1 | Amico_0689 | Amico_0732 | PFAM: DNA polymerase III delta. | TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gur:Gura_2507 DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein. | 0.942 |
ADE56824.1 | ADE57176.1 | Amico_0689 | Amico_1052 | PFAM: DNA polymerase III delta. | KEGG: pca:Pcar_1692 DNA polymerase III, gamma/tau subunits. | 0.932 |