STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE56851.1KEGG: spt:SPA4025 transcriptional repressor IclR; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR. (259 aa)    
Predicted Functional Partners:
ADE56850.1
TIGRFAM: glutamate formiminotransferase; KEGG: sat:SYN_00461 glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein.
       0.591
ADE56635.1
KEGG: dat:HRM2_46540 putative allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.
  
    0.470
ADE56636.1
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: bbr:BB4478 hypothetical protein; PFAM: Allophanate hydrolase subunit 2.
  
    0.456
Your Current Organism:
Aminobacterium colombiense
NCBI taxonomy Id: 572547
Other names: A. colombiense DSM 12261, Aminobacterium colombiense DSM 12261, Aminobacterium colombiense str. DSM 12261, Aminobacterium colombiense strain DSM 12261
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.