STRINGSTRING
dps protein (Klebsiella pneumoniae) - STRING interaction network
"dps" - DNA protection during starvation protein in Klebsiella pneumoniae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dpsDNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co- crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (167 aa)    
Predicted Functional Partners:
JG24_07855
NAD(P)H dehydrogenase (quinone); Catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the WrbA family (198 aa)
   
   
  0.745
JG24_12860
Osmotically inducible protein C; Derived by automated computational analysis using gene prediction method- Protein Homology (143 aa)
   
   
  0.715
JG24_10240
Universal stress protein F; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the universal stress protein A family (144 aa)
     
   
  0.635
JG24_12935
30S ribosomal subunit protein S22 stationary phase-induced ribosome-associated protein; Derived by automated computational analysis using gene prediction method- Protein Homology (46 aa)
     
        0.631
JG24_07850
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (75 aa)
     
        0.617
JG24_19530
Derived by automated computational analysis using gene prediction method- Protein Homology (115 aa)
   
        0.607
JG24_10625
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (67 aa)
           
  0.600
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (169 aa)
         
  0.597
JG24_22500
Uncharacterized membrane protein YqjD; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
   
        0.587
JG24_08730
Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
   
   
  0.582
Your Current Organism:
Klebsiella pneumoniae
NCBI taxonomy Id: 573
Other names: ATCC 13883, Bacillus pneumoniae, Bacterium pneumoniae crouposae, CCUG 225, CIP 82.91, DSM 30104, HAMBI 450, Hyalococcus pneumoniae, IFO 14940, K. pneumoniae, Klebsiella pneumoniae, Klebsiella sp. M-AI-2, Klebsiella sp. PB12, Klebsiella sp. RCE-7, LMG 2095, NBRC 14940, NCTC 9633
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