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potD protein (Klebsiella pneumoniae) - STRING interaction network
"potD" - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) in Klebsiella pneumoniae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potDABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1); Can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)    
Predicted Functional Partners:
potC
Can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; Derived by automated computational analysis using gene prediction method- Protein Homology (261 aa)
 
  0.999
potB
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1); Can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.996
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system (378 aa)
  0.993
JG24_06920
Putrescine transport system permease protein PotI (TC 3.A.1.11.2); Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)
   
  0.965
JG24_13340
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1); Derived by automated computational analysis using gene prediction method- Protein Homology (268 aa)
   
  0.898
JG24_06915
Putrescine transport system permease protein PotH (TC 3.A.1.11.2); Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
   
  0.860
JG24_13345
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1); Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
   
  0.725
potG
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system (388 aa)
 
  0.649
JG24_27320
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
   
  0.648
JG24_13350
Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
 
  0.633
Your Current Organism:
Klebsiella pneumoniae
NCBI taxonomy Id: 573
Other names: ATCC 13883, Bacillus pneumoniae, Bacterium pneumoniae crouposae, CCUG 225, CIP 82.91, DSM 30104, HAMBI 450, Hyalococcus pneumoniae, IFO 14940, K. pneumoniae, Klebsiella pneumoniae, Klebsiella sp. M-AI-2, Klebsiella sp. PB12, Klebsiella sp. RCE-7, LMG 2095, NBRC 14940, NCTC 9633
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